Christian Schmidt

About Christian Schmidt

Contributions by the I3D:bio office are drafted by Christian. Texts are reviewed by members of the I3D:bio team or external collaborators. Feedback welcome.

Introduction to Image Data Repositories and Public Archives

By |2023-11-29T16:47:42+01:00May 31st, 2023|

Back to: Image Data Repositories Introduction to Image Data Repositories and Public Archives Many bioimaging experiments are time-consuming and cost-intensive, and the acquired images are almost always subjected to image analysis to quantify image features of interest. Many imaging approaches thus produce large datasets, the value of which may extend [...]

Bio-Formats – a translator of different file formats

By |2023-03-16T11:15:28+01:00September 16th, 2022|

Back to: Microscopy File Formats Translating Bioimaging File Formats with "Bio-Formats" The Open Microscopy Environment Consortium has created the so-called Bio-Formats library (Linkert et al., 2010, J Cell Biol) to enable the translation from a large number of proprietary file formats to the OME data model, generating OME-TIFF as a potential output file. [...]

Basics of Imaging File Formats

By |2023-08-01T09:50:04+02:00September 1st, 2022|

Back to: Microscopy File Formats Bioimaging File Formats explained The smallest piece of information underlying a computer is the distinction of two states (on or off), which can be represented as a binary digit (bit) with values 1 or 0. To store more complex information, more bits are combined. E.g., 8 [...]

Introduction to the Research Data Life Cycle

By |2023-07-24T11:35:22+02:00May 2nd, 2022|

Back to: Data Life Cycle Your Content Goes Here Research involves data. To ensure success, effectiveness and sustainability of a research project, all aspects of handling the research data should be carefully planned. Data generated in one research project can be a valuable resource for other researchers working on different research questions but [...]

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