Back to: Image Data Repositories Introduction to Image Data Repositories and Public Archives Many bioimaging experiments are time-consuming and cost-intensive, and the acquired images are almost always subjected to image analysis to quantify image features of interest. Many imaging approaches thus produce large datasets, the value of which may extend [...]
https://gerbi-gmb.de/i3dbio/i3dbio-resources/metadata-guide/
https://gerbi-gmb.de/i3dbio/i3dbio-rdm/microscopyfileformats/
https://zenodo.org/record/7018750#.Y4XEeHSZObg
Back to: Microscopy File Formats Translating Bioimaging File Formats with "Bio-Formats" The Open Microscopy Environment Consortium has created the so-called Bio-Formats library (Linkert et al., 2010, J Cell Biol) to enable the translation from a large number of proprietary file formats to the OME data model, generating OME-TIFF as a potential output file. [...]
Back to: Microscopy File Formats Bioimaging File Formats explained The smallest piece of information underlying a computer is the distinction of two states (on or off), which can be represented as a binary digit (bit) with values 1 or 0. To store more complex information, more bits are combined. E.g., 8 [...]
Metadata is often referred to as "data about data". It describes properties associated with the experiment that has led to the pixel image including all information to fully understand what was imaged and how the image was generated.Technical metadataThis metadata includes information on the hardware that was used to acquire an image and which settings [...]
How is data and metadata structured in bioimaging? To provide a comprehensive overview of the most important technical terms and concepts with respect to metadata, the I3D:bio team created a poster that combines a glossary on terms with the conceptual relationships between different terms. This poster is also presented in a recorded poster talk by [...]
Back to: Microscopy File Formats Digital images for beginners How does the computer store a microscopy image? Photographs and microscopy images are recordings of real-world objects acquired with imaging devices. A microscopy image is thus a representation of the real object based on experimental setup and the device used (i.e., not [...]
Back to: Data Life Cycle Your Content Goes Here Research involves data. To ensure success, effectiveness and sustainability of a research project, all aspects of handling the research data should be carefully planned. Data generated in one research project can be a valuable resource for other researchers working on different research questions but [...]
