Welcome to I3D:bio – a research data management resource for bioimaging with a focus on light microscopy

Looking for a resource to aid with…

  • learning and teaching about microscopy research data management?
  • organizing your microscopy research data?
  • storing, sharing and archiving your images?
  • linking your image data with experimental protocols and analysis results?
  • setting up microscopy reasearch data management at your institute or facility?

Check out these I3D:bio project pages and contact us for questions and support.

I3D:bio is developing the following resources, materials and services for the bioimaging community:

Current project status:

What’s new?

The AIMM – Automated Image Management and Metadata User group is in informal group, organized by BioImaging North America.
In the next meeting, on December 1st, Tom Boissonnet will speak about his experience with optimizing data organization in OMERO for easier metadata annotation.
https://www.bioimagingnorthamerica.org/events/aimm-user-group/ 
Recording: https://www.youtube.com/watch?v=BNZKMiuK7kg 

The I3D:bio project has published a key deliverable: The I3D:bio training material as an open, reusable material for local user training by core facility staff and others.
Check out the resource here: https://gerbi-gmb.de/i3dbio/i3dbio-teaching/train-mat/

Latest Content:

2023-11-28:
Tom Boissonnet offered a workshop on OMERO.figure for the creation of reproducible figures in OMERO at the Halfway to I2K Conference 2023. The workshop recording is now available here.

2023-08-04:
We updated the Bioimaging Metatadata Standards page to integrate the newly published MIHCSME standard by Hosseini et al. Check it out!

2023-07-24:
Update on the bioimaging data life cycle. Find a walk-through explanation for bioimage data management along the data life cycle concept.

2023-06-12:
New post: Perspective on RDM in bioimage analysis by Tom Boissonnet

2023-06-05:
New page about Bioimaging Metatadata Standards