Welcome to I3D:bio – a research data management resource for bioimaging with a focus on light microscopy
Looking for a resource to aid with…
- learning and teaching about microscopy research data management?
- organizing your microscopy research data?
- storing, sharing and archiving your images?
- linking your image data with experimental protocols and analysis results?
- setting up microscopy reasearch data management at your institute or facility?
Check out these I3D:bio project pages and contact us for questions and support.
I3D:bio is developing the following resources, materials and services for the bioimaging community:
- Deployment support for new image data management practices at your institute or university (see Guides & Resources)
- Standardized image acquistion quality control (see Guides & Resouces)
- Enrolling users to adopt FAIR image data management practices (see Teaching Material & Events)
- Learning about bioimaging RDM (see About Bioimaging Data)
- Teaching bioimaging RDM practices for specific audiences (see Teaching Material & Events)
- Your specific needs and questions with respect to bioimaging RDM (see HelpDesk & Contact)
Current project status:
What’s new?
In collaboration with the TU Dresden Medical Faculty and partners from NFDI4BIOIMAGE, we have published a use case report about setting up an institutional OMERO instance. See the original paper in Journal of Microscopy: https://doi.org/10.1111/jmi.13360
The Gesellschaft für Biochemie und Molekularbiologie (GBM) will host the GBM Compact Symposium in Frankfurt on Sept. 26th and 27th.
Jointly organized by NFDI4BIOIMAGE and the I3D:bio project, we will present a workshop about research data management for bioimaging data.
The I3D:bio team offers a new workshop, directed at teams from imaging facilities and IT departments to learn about a structured approach for implementing a new OMERO instance at a research institution or university.
On-premise on October 16th & 17th
Find more information here. (Registration is closed now)
Latest Content:
2024-05:
Based on the experience with use case partners from I3D:bio, we have published a review: A practical guide to bioimaging research data management in core facilities. Read the full publication in the Journal of Microscopy: Schmidt, C., et al. (2024). Journal of Microscopy, 294, 350–371. https://doi.org/10.1111/jmi.13317
2023-11-28:
Tom Boissonnet offered a workshop on OMERO.figure for the creation of reproducible figures in OMERO at the Halfway to I2K Conference 2023. The workshop recording is now available here.
2023-11-14:
The I3D:bio project has published a key deliverable: The I3D:bio training material as an open, reusable material for local user training by core facility staff and others.
Check out the resource here: https://gerbi-gmb.de/i3dbio/i3dbio-teaching/train-mat/
2023-08-04:
We updated the Bioimaging Metatadata Standards page to integrate the newly published MIHCSME standard by Hosseini et al. Check it out!
