OMERO = OME Remote Objects, a software product by the Open Microscopy Environment Consortium: https://www.openmicroscopy.org

Publications from or with contribution from the I3D:bio project

  • Anett Jannasch, Cindy Welzel, Jessica Pablik, Elizabeth von Hauff, Roberta Galli, Jan Rix, Antje Schauer, Claudia Dittfeld, Sems-Malte Tugtekin; In vivo application of a glutaraldehyde-free, UVA/riboflavin cross-linked bovine pericardium confirms suitability for cardiovascular substitutes. APL Mater. 1 January 2024; 12 (1): 011104. https://doi.org/10.1063/5.0182672
    (The data of this research article is publicly available in the TU Dresden’s OMERO instance, which was set up with support from I3D:bio. The metadata annotation in compliance with the REMBI checklist was support by I3D:bio and NFDI4BIOIMAGE)
  • Schmidt, C., Bortolomeazzi, M., Boissonnet, T., Dohle, J., Wernet, T., Hanne, J., Nitschke, R., Kunis, S., Bernhardt, K., Weidtkamp-Peters, S., & Ferrando-May, E. (2023). Bringing FAIR Bioimage Data Management into Practice: the Information Infrastructure for BioImage Data (I3D:bio) Project – bottom-up Community Support for Microscopy Data Sharing and Preservation. In V. Heuveline, N. Bisheh, & P. . Kling (Hrsg.), E-Science-Tage 2023: Empower Your Research – Preserve Your Data (S. 289-294). heiBOOKS. https://doi.org/10.11588/heibooks.1288.c18090
  • Schmidt, C., Bortolomeazzi, M., Boissonnet, T., Fortmann-Grote, C., Dohle, J., Zentis, P., Kandpal, N., Kunis, S., Zobel, T., Weidtkamp-Peters, S., & Ferrando-May, E. (2023). I3D:bio’s OMERO training material: Re-usable, adjustable, multi-purpose slides for local user training. Zenodo. https://doi.org/10.5281/zenodo.8323588 (training material and videos)
  • Kunis, Susanne, & Dohle, Julia. (2022). Structuring of Data and Metadata in Bioimaging: Concepts and technical Solutions in the Context of Linked Data. Zenodo. https://doi.org/10.5281/zenodo.7018750 (poster)
  • Kunis, Susanne. (2022, August 24). Structuring of Data and Metadata in Bioimaging: Concepts and technical Solutions in the Context of Linked Data. Zenodo. https://doi.org/10.5281/zenodo.7018929 (video)
  • Schmidt C, Hanne J, Moore J et al. Research data management for bioimaging: the 2021 NFDI4BIOIMAGE community survey [version 2; peer review: 2 approved]. F1000Research 2022, 11:638 https://doi.org/10.12688/f1000research.121714.2

Conference Contributions

  • Kunis S., J. Lacoste, C. Strambio-De-Castillia, S. Weidtkamp-Peters: Data Management for Bioimaging Data and Metadata Annotation Tools. Conference Workshop, European Light Microscopy Initiative (ELMI) Meeting 2023, June 6th – 9th, Noordwijkerhout, NL
  • Boissonnet T., J. Dohle, C. Schmidt, C. Strambio-De-Castillia, T. Wernet: Hands-on metadata annotation for bioimaging using a REMBI-based annotation template. Conference Workshop, European Light Microscopy Initiative (ELMI) Meeting 2023, June 6th – 9th, Noordwijkerhout, NL
  • Schmidt C et al.: Bringing FAIR bioimage data management into practice: the Information Infrastructure for BioImage Data (I3D:bio) project – bottom-up community support for microscopy data sharing and preservation. Conference Poster, E-Science Tage 2023, March 1-3, Heidelberg, Germany
  • Boissonnet T et al.: Bioimage analysis for Research Data Management, Conference Poster, Crick Bioimage Analysis Symposium 2022, November 21-22, London, UK
  • Schmidt C: Bringing FAIR data management into practice for the bioimaging community, Conference Talk, Max Planck BioImaging Core Unit Network Assembly, October 6th, 2022, Potsdam, Germany

Other types of public contributions: