Structuring of Data and Metadata in Bioimaging: Concepts and technical Solutions in the Context of Linked Data
https://zenodo.org/record/7018750#.Y4XEeHSZObg
Bio-Formats – a translator of different file formats
Translating Bioimaging File Formats with "Bio-Formats" The Open Microscopy Environment Consortium has created the so-called Bio-Formats library (Linkert et al., 2010, J Cell Biol) to enable the translation from a large number of proprietary file formats to the OME data model, generating OME-TIFF as a potential output file. Most files generated at the vendor-specific [...]
Basics of Imaging File Formats
Bioimaging File Formats explained A computer's most basic unit of information is a simple distinction between two states: on or off. This is represented as a binary digit (or bit) with a value of either 1 (on) or 0 (off). To store more complex information, multiple bits are combined. For example, [...]
Types of metadata in bioimaging
Metadata is often referred to as "data about data". It describes properties associated with the experiment that has led to the pixel image including all information to fully understand what was imaged and how the image was generated.Technical metadataThis metadata includes information on the hardware that was used to acquire an image and which settings [...]
Overview of Bioimage Data and Metadata
How is data and metadata structured in bioimaging? To provide a comprehensive overview of the most important technical terms and concepts with respect to metadata, the I3D:bio team created a poster that combines a glossary on terms with the conceptual relationships between different terms. This poster is also presented in a recorded poster talk by [...]
Digital images in bioimaging for beginners
Digital images for beginners How does the computer store a microscopy image? Photographs and microscopy images are recordings of real-world objects acquired with imaging devices. A microscopy image is thus a representation of the real object based on experimental setup and the device used (i.e., not "the" reality). The light that was [...]
Introduction to the Research Data Life Cycle
Your Content Goes Here Research involves data. To ensure the success, effectiveness, and sustainability of a research project, all aspects of handling the research data should be carefully planned. Data generated in one research project can be a valuable resource for other researchers working on different research questions, but also for follow-up research projects of [...]
